Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFDA4_RS07765 Genome accession   NZ_CP170661
Coordinates   1648385..1649257 (-) Length   290 a.a.
NCBI ID   WP_123213608.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CCARM 3A686     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1643385..1654257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDA4_RS07750 (ACFDA4_07750) xerC 1643687..1644547 (-) 861 WP_002446287.1 tyrosine recombinase XerC -
  ACFDA4_RS07755 (ACFDA4_07755) trmFO 1644801..1646108 (-) 1308 WP_002495759.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACFDA4_RS07760 (ACFDA4_07760) topA 1646133..1648202 (-) 2070 WP_002446285.1 type I DNA topoisomerase -
  ACFDA4_RS07765 (ACFDA4_07765) dprA 1648385..1649257 (-) 873 WP_123213608.1 DNA-processing protein DprA Machinery gene
  ACFDA4_RS07770 (ACFDA4_07770) sucD 1650048..1650956 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  ACFDA4_RS07775 (ACFDA4_07775) sucC 1650978..1652144 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFDA4_RS07780 (ACFDA4_07780) - 1652252..1653022 (-) 771 WP_002489955.1 ribonuclease HII -
  ACFDA4_RS07785 (ACFDA4_07785) ylqF 1653027..1653890 (-) 864 WP_002446281.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33878.91 Da        Isoelectric Point: 9.7522

>NTDB_id=1058586 ACFDA4_RS07765 WP_123213608.1 1648385..1649257(-) (dprA) [Staphylococcus epidermidis strain CCARM 3A686]
MIQHTMLKLYWANFTTAQLHHLTRKYPDFLSENVFHQHDMIKRWLTDRNSERLWNKYERFKKLKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYFLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSRGVFITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILIDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1058586 ACFDA4_RS07765 WP_123213608.1 1648385..1649257(-) (dprA) [Staphylococcus epidermidis strain CCARM 3A686]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACAGCACAACTTCATCATCTTACACGTAAATATCC
CGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGATGGCTTACAGATCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAAAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACG
ACATACTTCGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTCTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGTGGCGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACTTTTTACCAACTATTGGCGTACTTGGATTTGGACATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGAAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAATAAGTATAAATTTC
CTGAAAGAAACAGACTTATAAGTGGTCTGTCTAGAGGAGTTTTTATAACCGAGGCTGAAGAAAGAAGTGGTAGTCAAATT
ACTATTGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGCAA
TTTACGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATCTTAATTGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.292

99.31

0.569
  dprA Staphylococcus aureus N315

57.292

99.31

0.569

Multiple sequence alignment