Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACFDA4_RS03985 | Genome accession | NZ_CP170661 |
| Coordinates | 852180..852575 (+) | Length | 131 a.a. |
| NCBI ID | WP_002447777.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain CCARM 3A686 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 847180..857575
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFDA4_RS03960 (ACFDA4_03960) | - | 848599..849003 (+) | 405 | WP_002447782.1 | F0F1 ATP synthase subunit epsilon | - |
| ACFDA4_RS03965 (ACFDA4_03965) | - | 849152..849385 (+) | 234 | WP_002495678.1 | DUF1146 family protein | - |
| ACFDA4_RS03970 (ACFDA4_03970) | murA | 849495..850760 (+) | 1266 | WP_232166523.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| ACFDA4_RS03975 (ACFDA4_03975) | fabZ | 850794..851231 (+) | 438 | WP_391039643.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ACFDA4_RS03980 (ACFDA4_03980) | - | 851549..851989 (-) | 441 | WP_002458706.1 | YwpF-like family protein | - |
| ACFDA4_RS03985 (ACFDA4_03985) | ssb | 852180..852575 (+) | 396 | WP_002447777.1 | single-stranded DNA-binding protein | Machinery gene |
| ACFDA4_RS03990 (ACFDA4_03990) | - | 852963..853622 (+) | 660 | WP_002447776.1 | transglycosylase family protein | - |
| ACFDA4_RS03995 (ACFDA4_03995) | tenA | 853906..854595 (+) | 690 | WP_002447775.1 | thiaminase II | - |
| ACFDA4_RS04000 (ACFDA4_04000) | thiD | 854588..855409 (+) | 822 | WP_002458705.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ACFDA4_RS04005 (ACFDA4_04005) | thiM | 855402..856190 (+) | 789 | WP_002475462.1 | hydroxyethylthiazole kinase | - |
| ACFDA4_RS04010 (ACFDA4_04010) | thiE | 856196..856834 (+) | 639 | WP_391039847.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15144.99 Da Isoelectric Point: 5.2661
>NTDB_id=1058568 ACFDA4_RS03985 WP_002447777.1 852180..852575(+) (ssb) [Staphylococcus epidermidis strain CCARM 3A686]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=1058568 ACFDA4_RS03985 WP_002447777.1 852180..852575(+) (ssb) [Staphylococcus epidermidis strain CCARM 3A686]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |