Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFDBC_RS07730 Genome accession   NZ_CP170659
Coordinates   1635699..1636574 (-) Length   291 a.a.
NCBI ID   WP_020359761.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CCARM 3A600     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1630699..1641574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDBC_RS07715 (ACFDBC_07715) xerC 1631004..1631864 (-) 861 WP_391201047.1 tyrosine recombinase XerC -
  ACFDBC_RS07720 (ACFDBC_07720) trmFO 1632118..1633425 (-) 1308 WP_391200301.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACFDBC_RS07725 (ACFDBC_07725) topA 1633450..1635519 (-) 2070 WP_002446285.1 type I DNA topoisomerase -
  ACFDBC_RS07730 (ACFDBC_07730) dprA 1635699..1636574 (-) 876 WP_020359761.1 DNA-processing protein DprA Machinery gene
  ACFDBC_RS07735 (ACFDBC_07735) - 1636899..1636999 (-) 101 Protein_1488 IS200/IS605 family transposase -
  ACFDBC_RS07740 (ACFDBC_07740) - 1637057..1637168 (-) 112 Protein_1489 IS200/IS605 family transposase -
  ACFDBC_RS07745 (ACFDBC_07745) sucD 1637365..1638273 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  ACFDBC_RS07750 (ACFDBC_07750) sucC 1638295..1639461 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFDBC_RS07755 (ACFDBC_07755) - 1639569..1640339 (-) 771 WP_002457372.1 ribonuclease HII -
  ACFDBC_RS07760 (ACFDBC_07760) ylqF 1640344..1641207 (-) 864 WP_002457373.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33919.03 Da        Isoelectric Point: 9.7588

>NTDB_id=1058555 ACFDBC_RS07730 WP_020359761.1 1635699..1636574(-) (dprA) [Staphylococcus epidermidis strain CCARM 3A600]
MIQHTMLKLYWANFTTAQLHHLTRTYPGFLSENVFHQHDMIKRWLTERNSERLWNKYERFKKLKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSLAHQ
TALKYFLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILIDYLFM

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1058555 ACFDBC_RS07730 WP_020359761.1 1635699..1636574(-) (dprA) [Staphylococcus epidermidis strain CCARM 3A600]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACAGCACAACTTCATCATCTTACACGTACATATCC
CGGCTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAAAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACG
ACATACTTCGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTCTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGTGGCGCAGATAGTTTAGCACATCAA
ACCGCACTTAAATACTTTTTACCAACTATTGGCGTACTTGGATTTGGACATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGAAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCCATAAATAAGTATAAATTTC
CTGAAAGAAACAGACTTATAAGTGGTCTGTCTAGAGGGGTTCTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATT
ACTATTGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGCAA
TTTACGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATCTTAATTGATTATCTATTTATGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.639

98.969

0.57
  dprA Staphylococcus aureus N315

57.639

98.969

0.57

Multiple sequence alignment