Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | ACFDBC_RS06270 | Genome accession | NZ_CP170659 |
| Coordinates | 1296337..1297311 (+) | Length | 324 a.a. |
| NCBI ID | WP_002446534.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain CCARM 3A600 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1291337..1302311
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFDBC_RS06235 (ACFDBC_06235) | rpmG | 1291819..1291968 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| ACFDBC_RS06240 (ACFDBC_06240) | - | 1292149..1292700 (+) | 552 | WP_002446539.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| ACFDBC_RS06245 (ACFDBC_06245) | - | 1292701..1294161 (+) | 1461 | WP_038813170.1 | rhomboid family intramembrane serine protease | - |
| ACFDBC_RS06250 (ACFDBC_06250) | - | 1294145..1294345 (+) | 201 | WP_002446537.1 | YqgQ family protein | - |
| ACFDBC_RS06255 (ACFDBC_06255) | - | 1294345..1295331 (+) | 987 | WP_002446536.1 | ROK family glucokinase | - |
| ACFDBC_RS06260 (ACFDBC_06260) | - | 1295331..1295657 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| ACFDBC_RS06265 (ACFDBC_06265) | - | 1295657..1296280 (+) | 624 | WP_002446535.1 | MBL fold metallo-hydrolase | - |
| ACFDBC_RS06270 (ACFDBC_06270) | comGA | 1296337..1297311 (+) | 975 | WP_002446534.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACFDBC_RS06275 (ACFDBC_06275) | comGB | 1297283..1298351 (+) | 1069 | Protein_1197 | competence type IV pilus assembly protein ComGB | - |
| ACFDBC_RS06280 (ACFDBC_06280) | comGC | 1298369..1298686 (+) | 318 | WP_002446532.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACFDBC_RS06285 (ACFDBC_06285) | comGD | 1298676..1299113 (+) | 438 | WP_002446531.1 | competence type IV pilus minor pilin ComGD | - |
| ACFDBC_RS06290 (ACFDBC_06290) | - | 1299100..1299393 (+) | 294 | WP_002446530.1 | hypothetical protein | - |
| ACFDBC_RS06295 (ACFDBC_06295) | - | 1299317..1299808 (+) | 492 | WP_002457724.1 | competence type IV pilus minor pilin ComGF | - |
| ACFDBC_RS06300 (ACFDBC_06300) | - | 1299973..1300485 (+) | 513 | WP_002457723.1 | shikimate kinase | - |
| ACFDBC_RS06305 (ACFDBC_06305) | gcvT | 1300703..1301794 (+) | 1092 | WP_002457722.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37261.33 Da Isoelectric Point: 8.8257
>NTDB_id=1058549 ACFDBC_RS06270 WP_002446534.1 1296337..1297311(+) (comGA) [Staphylococcus epidermidis strain CCARM 3A600]
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDTLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KRLYYLRISTLPLSLGNESCVIRIVPQYFQTKRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQNLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNTRQLVSELMFQSQINYFFEHNHSLPKNFTKLSTHLNKMSKEGVICEEVV
DKYI
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDTLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KRLYYLRISTLPLSLGNESCVIRIVPQYFQTKRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQNLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNTRQLVSELMFQSQINYFFEHNHSLPKNFTKLSTHLNKMSKEGVICEEVV
DKYI
Nucleotide
Download Length: 975 bp
>NTDB_id=1058549 ACFDBC_RS06270 WP_002446534.1 1296337..1297311(+) (comGA) [Staphylococcus epidermidis strain CCARM 3A600]
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATACACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGGTTAGATGTATCAACACAGCATAGGGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCGTTTATATTATTTAAGAATCTCTACATTACCGTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTAAACGAGAATCATATGAATTTAAAGATTTTAAACATTTCATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGGCCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAATTTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTAGAACAAATACTCAATGGAATCACACAAATATCAGTTAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCGGACGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGTGGACATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCATTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATACTCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATCAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTATCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATACACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGGTTAGATGTATCAACACAGCATAGGGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCGTTTATATTATTTAAGAATCTCTACATTACCGTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTAAACGAGAATCATATGAATTTAAAGATTTTAAACATTTCATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGGCCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAATTTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTAGAACAAATACTCAATGGAATCACACAAATATCAGTTAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCGGACGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGTGGACATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCATTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATACTCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATCAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTATCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.062 |
100 |
0.701 |
| comGA | Staphylococcus aureus N315 |
70.062 |
100 |
0.701 |