Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACFDBC_RS03925 | Genome accession | NZ_CP170659 |
| Coordinates | 841548..841943 (+) | Length | 131 a.a. |
| NCBI ID | WP_002447777.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain CCARM 3A600 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 836548..846943
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFDBC_RS03900 (ACFDBC_03900) | - | 837967..838371 (+) | 405 | WP_002447782.1 | F0F1 ATP synthase subunit epsilon | - |
| ACFDBC_RS03905 (ACFDBC_03905) | - | 838520..838753 (+) | 234 | WP_002495678.1 | DUF1146 family protein | - |
| ACFDBC_RS03910 (ACFDBC_03910) | murA | 838863..840128 (+) | 1266 | WP_002458708.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| ACFDBC_RS03915 (ACFDBC_03915) | fabZ | 840162..840599 (+) | 438 | WP_002458707.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ACFDBC_RS03920 (ACFDBC_03920) | - | 840917..841357 (-) | 441 | WP_002458706.1 | YwpF-like family protein | - |
| ACFDBC_RS03925 (ACFDBC_03925) | ssb | 841548..841943 (+) | 396 | WP_002447777.1 | single-stranded DNA-binding protein | Machinery gene |
| ACFDBC_RS03930 (ACFDBC_03930) | - | 842331..842990 (+) | 660 | WP_002447776.1 | transglycosylase family protein | - |
| ACFDBC_RS03935 (ACFDBC_03935) | tenA | 843273..843962 (+) | 690 | WP_002447775.1 | thiaminase II | - |
| ACFDBC_RS03940 (ACFDBC_03940) | thiD | 843955..844776 (+) | 822 | WP_002458705.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ACFDBC_RS03945 (ACFDBC_03945) | thiM | 844769..845557 (+) | 789 | WP_020363517.1 | hydroxyethylthiazole kinase | - |
| ACFDBC_RS03950 (ACFDBC_03950) | thiE | 845563..846201 (+) | 639 | WP_002458704.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15144.99 Da Isoelectric Point: 5.2661
>NTDB_id=1058538 ACFDBC_RS03925 WP_002447777.1 841548..841943(+) (ssb) [Staphylococcus epidermidis strain CCARM 3A600]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=1058538 ACFDBC_RS03925 WP_002447777.1 841548..841943(+) (ssb) [Staphylococcus epidermidis strain CCARM 3A600]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |