Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACFXAD_RS08770 Genome accession   NZ_CP170653
Coordinates   1700503..1700838 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1695503..1705838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS08720 (ACFXAD_08720) comGC 1695694..1696002 (+) 309 WP_079979070.1 competence type IV pilus major pilin ComGC Machinery gene
  ACFXAD_RS08725 (ACFXAD_08725) comGD 1695992..1696429 (+) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACFXAD_RS08730 (ACFXAD_08730) comGE 1696413..1696727 (+) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  ACFXAD_RS08735 (ACFXAD_08735) comGF 1696636..1697136 (+) 501 WP_256052909.1 competence type IV pilus minor pilin ComGF -
  ACFXAD_RS08740 (ACFXAD_08740) comGG 1697137..1697514 (+) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACFXAD_RS08745 (ACFXAD_08745) - 1697571..1697750 (+) 180 WP_003153093.1 YqzE family protein -
  ACFXAD_RS08750 (ACFXAD_08750) - 1697790..1698119 (-) 330 WP_039254490.1 DUF3889 domain-containing protein -
  ACFXAD_RS08755 (ACFXAD_08755) tapA 1698378..1699049 (+) 672 WP_053573199.1 amyloid fiber anchoring/assembly protein TapA -
  ACFXAD_RS08760 (ACFXAD_08760) sipW 1699021..1699605 (+) 585 WP_015240205.1 signal peptidase I SipW -
  ACFXAD_RS08765 (ACFXAD_08765) tasA 1699670..1700455 (+) 786 WP_007408329.1 biofilm matrix protein TasA -
  ACFXAD_RS08770 (ACFXAD_08770) sinR 1700503..1700838 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACFXAD_RS08775 (ACFXAD_08775) sinI 1700872..1701045 (-) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACFXAD_RS08780 (ACFXAD_08780) - 1701222..1702016 (-) 795 WP_007408330.1 YqhG family protein -
  ACFXAD_RS08785 (ACFXAD_08785) - 1702038..1703708 (-) 1671 WP_031378948.1 DEAD/DEAH box helicase -
  ACFXAD_RS08790 (ACFXAD_08790) gcvT 1704132..1705232 (+) 1101 WP_053573200.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1058494 ACFXAD_RS08770 WP_003153104.1 1700503..1700838(-) (sinR) [Bacillus amyloliquefaciens strain JP5011]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1058494 ACFXAD_RS08770 WP_003153104.1 1700503..1700838(-) (sinR) [Bacillus amyloliquefaciens strain JP5011]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment