Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   ACFW99_RS01655 Genome accession   NZ_CP170651
Coordinates   340206..340604 (-) Length   132 a.a.
NCBI ID   WP_020955304.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5025     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 335206..345604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW99_RS01630 (ACFW99_01630) - 335378..336580 (+) 1203 WP_317859599.1 GTP-binding protein -
  ACFW99_RS01635 (ACFW99_01635) - 336645..337781 (+) 1137 WP_015416779.1 zinc-dependent alcohol dehydrogenase -
  ACFW99_RS01640 (ACFW99_01640) - 337796..338230 (+) 435 WP_007409358.1 RDD family protein -
  ACFW99_RS01645 (ACFW99_01645) - 338302..338625 (+) 324 WP_060675310.1 YckD family protein -
  ACFW99_RS01650 (ACFW99_01650) - 338729..340165 (+) 1437 WP_060675311.1 glycoside hydrolase family 1 protein -
  ACFW99_RS01655 (ACFW99_01655) nin/comJ 340206..340604 (-) 399 WP_020955304.1 competence protein ComJ Regulator
  ACFW99_RS01660 (ACFW99_01660) nucA/comI 340625..341062 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACFW99_RS01665 (ACFW99_01665) hxlB 341420..341977 (-) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  ACFW99_RS01670 (ACFW99_01670) hxlA 341974..342609 (-) 636 WP_031378686.1 3-hexulose-6-phosphate synthase -
  ACFW99_RS01675 (ACFW99_01675) - 342841..343203 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.97 Da        Isoelectric Point: 4.9712

>NTDB_id=1058381 ACFW99_RS01655 WP_020955304.1 340206..340604(-) (nin/comJ) [Bacillus amyloliquefaciens strain JP5025]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1058381 ACFW99_RS01655 WP_020955304.1 340206..340604(-) (nin/comJ) [Bacillus amyloliquefaciens strain JP5025]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75

100

0.75

Multiple sequence alignment