Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACFXAB_RS05905 Genome accession   NZ_CP170650
Coordinates   1154858..1155547 (+) Length   229 a.a.
NCBI ID   WP_197535984.1    Uniprot ID   -
Organism   Bacillus velezensis strain JP5039     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1149858..1160547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAB_RS05880 (ACFXAB_05880) degS 1150142..1151305 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACFXAB_RS05885 (ACFXAB_05885) degU 1151382..1152071 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACFXAB_RS05890 (ACFXAB_05890) - 1152169..1153017 (+) 849 WP_003151387.1 DegV family protein -
  ACFXAB_RS05895 (ACFXAB_05895) comFA 1153125..1154510 (+) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  ACFXAB_RS05900 (ACFXAB_05900) - 1154568..1154852 (+) 285 WP_014419011.1 late competence development ComFB family protein -
  ACFXAB_RS05905 (ACFXAB_05905) comFC 1154858..1155547 (+) 690 WP_197535984.1 ComF family protein Machinery gene
  ACFXAB_RS05910 (ACFXAB_05910) - 1155621..1156040 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  ACFXAB_RS05915 (ACFXAB_05915) flgM 1156110..1156376 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACFXAB_RS05920 (ACFXAB_05920) - 1156391..1156873 (+) 483 WP_003151394.1 flagellar protein FlgN -
  ACFXAB_RS05925 (ACFXAB_05925) flgK 1156889..1158406 (+) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  ACFXAB_RS05930 (ACFXAB_05930) flgL 1158418..1159335 (+) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  ACFXAB_RS05935 (ACFXAB_05935) - 1159426..1159995 (+) 570 WP_003151397.1 DUF6470 family protein -
  ACFXAB_RS05940 (ACFXAB_05940) fliW 1160025..1160456 (+) 432 WP_003151399.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25250.91 Da        Isoelectric Point: 7.7729

>NTDB_id=1058325 ACFXAB_RS05905 WP_197535984.1 1154858..1155547(+) (comFC) [Bacillus velezensis strain JP5039]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKCFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1058325 ACFXAB_RS05905 WP_197535984.1 1154858..1155547(+) (comFC) [Bacillus velezensis strain JP5039]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGTGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment