Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   AAA982_RS08615 Genome accession   NZ_AP028601
Coordinates   1686949..1687875 (-) Length   308 a.a.
NCBI ID   WP_001291293.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1681949..1692875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS08595 (TKY113292_17010) treR 1683056..1683766 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  AAA982_RS08600 (TKY113292_17020) - 1683799..1684602 (-) 804 WP_115254439.1 ATP-binding cassette domain-containing protein -
  AAA982_RS08605 (TKY113292_17030) - 1684615..1685508 (-) 894 WP_130894676.1 ABC transporter permease -
  AAA982_RS08610 - 1685520..1686458 (-) 939 Protein_1704 ABC transporter substrate-binding protein -
  AAA982_RS08615 (TKY113292_17060) amiF 1686949..1687875 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  AAA982_RS08620 (TKY113292_17070) amiE 1687886..1688953 (-) 1068 WP_000159553.1 ABC transporter ATP-binding protein Regulator
  AAA982_RS08625 (TKY113292_17080) amiD 1688962..1689888 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  AAA982_RS08630 (TKY113292_17100) - 1689888..1691290 (-) 1403 Protein_1708 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34796.85 Da        Isoelectric Point: 6.6224

>NTDB_id=105823 AAA982_RS08615 WP_001291293.1 1686949..1687875(-) (amiF) [Streptococcus pneumoniae strain PF1]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=105823 AAA982_RS08615 WP_001291293.1 1686949..1687875(-) (amiF) [Streptococcus pneumoniae strain PF1]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGATCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment