Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AAA982_RS08595 Genome accession   NZ_AP028601
Coordinates   1683056..1683766 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain PF1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1678056..1688766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS08580 (TKY113292_16980) - 1678712..1678960 (-) 249 WP_000364990.1 YneF family protein -
  AAA982_RS08585 (TKY113292_16990) treC 1679102..1680727 (-) 1626 WP_317649124.1 alpha,alpha-phosphotrehalase -
  AAA982_RS08590 (TKY113292_17000) treP 1680905..1682872 (-) 1968 WP_317649125.1 PTS system trehalose-specific EIIBC component -
  AAA982_RS08595 (TKY113292_17010) treR 1683056..1683766 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  AAA982_RS08600 (TKY113292_17020) - 1683799..1684602 (-) 804 WP_115254439.1 ATP-binding cassette domain-containing protein -
  AAA982_RS08605 (TKY113292_17030) - 1684615..1685508 (-) 894 WP_130894676.1 ABC transporter permease -
  AAA982_RS08610 - 1685520..1686458 (-) 939 Protein_1704 ABC transporter substrate-binding protein -
  AAA982_RS08615 (TKY113292_17060) amiF 1686949..1687875 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=105822 AAA982_RS08595 WP_000760673.1 1683056..1683766(+) (treR) [Streptococcus pneumoniae strain PF1]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=105822 AAA982_RS08595 WP_000760673.1 1683056..1683766(+) (treR) [Streptococcus pneumoniae strain PF1]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGCGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment