Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AAA982_RS05715 Genome accession   NZ_AP028601
Coordinates   1120770..1121579 (-) Length   269 a.a.
NCBI ID   WP_050103757.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1115770..1126579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS05695 (TKY113292_11160) - 1118128..1119114 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  AAA982_RS05700 (TKY113292_11170) - 1119391..1120134 (-) 744 Protein_1126 ion channel -
  AAA982_RS05705 (TKY113292_11180) - 1120181..1120435 (-) 255 WP_001812387.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AAA982_RS05710 (TKY113292_11190) - 1120437..1120679 (-) 243 WP_000208080.1 DUF6290 family protein -
  AAA982_RS05715 (TKY113292_11200) vicX 1120770..1121579 (-) 810 WP_050103757.1 MBL fold metallo-hydrolase Regulator
  AAA982_RS05720 (TKY113292_11210) micB 1121581..1122930 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AAA982_RS05725 (TKY113292_11220) micA 1122923..1123627 (-) 705 WP_000722076.1 response regulator YycF Regulator
  AAA982_RS05730 (TKY113292_11230) mutY 1123683..1124858 (-) 1176 WP_000886145.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29944.94 Da        Isoelectric Point: 6.1743

>NTDB_id=105808 AAA982_RS05715 WP_050103757.1 1120770..1121579(-) (vicX) [Streptococcus pneumoniae strain PF1]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLVQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=105808 AAA982_RS05715 WP_050103757.1 1120770..1121579(-) (vicX) [Streptococcus pneumoniae strain PF1]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGTTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment