Detailed information NTG1057971

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACFJIW_RS23285
• Genome accession: NZ_CP170554
• Coordinates: 5584790..5586187 (+)
• Length: 465 a.a.
• NCBI ID: WP_386067585.1
• Uniprot ID: -
• Organism: Tahibacter sp. UC22_41
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5579790..5591187

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFJIW_RS23265 (ACFJIW_23265)	-	5579898..5580416 (-)	519	WP_386067579.1	hypothetical protein	-
ACFJIW_RS23270 (ACFJIW_23270)	sucD	5580769..5581644 (-)	876	WP_386067580.1	succinate--CoA ligase subunit alpha	-
ACFJIW_RS23275 (ACFJIW_23275)	sucC	5581656..5582816 (-)	1161	WP_386067582.1	ADP-forming succinate--CoA ligase subunit beta	-
ACFJIW_RS23280 (ACFJIW_23280)	-	5583071..5584711 (+)	1641	WP_386067583.1	sensor histidine kinase	-
ACFJIW_RS23285 (ACFJIW_23285)	pilR	5584790..5586187 (+)	1398	WP_386067585.1	sigma-54-dependent transcriptional regulator	Regulator
ACFJIW_RS23290 (ACFJIW_23290)	tfpZ	5586210..5587001 (+)	792	WP_386067587.1	TfpX/TfpZ family type IV pilin accessory protein	-
ACFJIW_RS23295 (ACFJIW_23295)	-	5587359..5590364 (-)	3006	WP_386067589.1	fused MFS/spermidine synthase	-
ACFJIW_RS23300 (ACFJIW_23300)	-	5590553..5590984 (+)	432	WP_386067591.1	pilin	-

Sequence

Protein

• Length: 465 a.a.
• Molecular weight: 51127.83 Da
• Isoelectric Point: 6.8372

>NTDB_id=1057971 ACFJIW_RS23285 WP_386067585.1 5584790..5586187(+) (pilR) [Tahibacter sp. UC22_41]
MSRQTALVIDDERDIRELLTITLGRMNLDVTTAGSVAEARSRLTERKYDLCFTDMRLPDGSGQEIIELVARQHPEMPIAM
ITAYGNVDAAVVALKAGAFDFVSKPVDLAMLRRLVQTALKLGEERRAGTSTTESKLIGDSPAMEHVRATIAKLARSQAPV
YISGESGVGKELVARQIHELGPRSGGAFVPVNCGAIPSELMESEFFGHKKGSFTGAHADKDGLFQAAHGGTLFLDEVAEL
PLHMQVKLLRVIQEKSVRPIGGRSEVAIDVRILSATHKNLARLVELGQFRQDLFYRINVIELRVPPLRERREDIPKLAGR
VLERLARDHGTSPARLKPEALAALLSYNFPGNVRELENVLERAVALCENNIIEVDDLQLVQQLHTRAASDGIPMPTAMPV
PAGNLAVDDDDDGQPQGLDDFISNIERETIMKALVETRYNKTAAAKKLGITFRALRYKLKKLAID

Nucleotide

• Length: 1398 bp

>NTDB_id=1057971 ACFJIW_RS23285 WP_386067585.1 5584790..5586187(+) (pilR) [Tahibacter sp. UC22_41]
ATGAGTAGACAAACCGCTCTGGTGATCGACGACGAACGCGACATCCGCGAACTGCTGACGATCACCCTGGGCCGCATGAA
CCTCGACGTGACCACGGCAGGCAGCGTCGCCGAAGCACGCAGCCGGCTGACCGAACGCAAATACGACCTCTGCTTCACCG
ACATGCGCCTGCCGGACGGCTCGGGCCAGGAGATCATCGAGCTCGTCGCGCGCCAGCATCCGGAAATGCCGATCGCGATG
ATCACGGCCTACGGCAACGTCGACGCGGCCGTCGTCGCGCTCAAGGCCGGCGCCTTCGACTTCGTATCCAAGCCCGTCGA
CCTGGCCATGCTGCGCCGGCTCGTGCAGACCGCGCTCAAGCTCGGCGAAGAGCGCCGCGCCGGCACCAGCACGACCGAAA
GCAAGCTGATCGGCGACTCGCCGGCCATGGAGCACGTGCGCGCGACGATCGCCAAGCTCGCGCGCAGCCAGGCGCCGGTC
TACATCAGCGGCGAATCCGGCGTCGGCAAGGAGCTCGTCGCGCGGCAGATCCACGAGCTCGGCCCGCGTTCCGGCGGCGC
CTTCGTGCCGGTCAACTGCGGCGCGATTCCGTCCGAACTCATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCA
CCGGCGCGCATGCGGACAAGGACGGTCTGTTCCAGGCAGCCCACGGCGGCACCCTGTTCCTCGACGAAGTGGCCGAGCTG
CCGCTGCACATGCAGGTCAAGCTGCTGCGCGTGATCCAGGAAAAGTCGGTGCGTCCGATCGGCGGCCGCAGCGAAGTCGC
GATCGACGTGCGCATCCTGTCGGCGACGCACAAGAACCTCGCGCGGCTCGTCGAGCTGGGCCAGTTCCGCCAGGACCTGT
TCTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGTCGCGAAGACATTCCCAAGCTGGCCGGCCGC
GTGCTCGAACGCCTCGCGCGCGACCACGGCACCAGCCCCGCACGGCTCAAACCCGAAGCGCTCGCGGCCCTGCTCTCCTA
CAACTTCCCGGGCAACGTGCGCGAGCTCGAGAACGTGCTGGAACGCGCCGTCGCGCTGTGCGAGAACAACATCATCGAGG
TCGACGATCTGCAGCTCGTGCAACAGCTGCACACGCGCGCCGCGTCCGACGGTATCCCGATGCCGACCGCGATGCCGGTG
CCGGCCGGCAACCTCGCCGTCGACGACGATGACGACGGCCAGCCGCAGGGCCTGGACGACTTCATCAGCAACATCGAGCG
CGAAACGATCATGAAGGCGCTGGTCGAGACGCGCTACAACAAGACCGCCGCGGCCAAGAAACTCGGCATCACGTTCCGCG
CGCTGCGCTACAAGCTCAAGAAACTCGCGATCGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (422-462)

• Sigma-54 interaction domain (Sigma54_activat) (136-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.151	100	0.622
pilR	Acinetobacter baumannii strain A118	48.18	100	0.484