Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AAA982_RS02615 Genome accession   NZ_AP028601
Coordinates   507196..507927 (+) Length   243 a.a.
NCBI ID   WP_000889956.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 502196..512927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS02590 (TKY113292_05050) - 503876..504232 (+) 357 WP_000114422.1 hypothetical protein -
  AAA982_RS02595 (TKY113292_05060) dnaJ 504505..505641 (+) 1137 WP_317641686.1 molecular chaperone DnaJ -
  AAA982_RS02600 (TKY113292_05070) - 505975..506259 (-) 285 WP_050150649.1 hypothetical protein -
  AAA982_RS02605 (TKY113292_05080) - 506421..506708 (-) 288 WP_317649295.1 hypothetical protein -
  AAA982_RS02610 (TKY113292_05090) - 506718..507128 (-) 411 WP_001278301.1 HIT family protein -
  AAA982_RS02615 (TKY113292_05100) pptA 507196..507927 (+) 732 WP_000889956.1 ABC transporter ATP-binding protein Regulator
  AAA982_RS02620 (TKY113292_05110) - 507924..508973 (+) 1050 WP_317641679.1 ABC transporter permease -
  AAA982_RS02625 (TKY113292_05120) - 509141..509470 (-) 330 WP_000132567.1 hypothetical protein -
  AAA982_RS02630 (TKY113292_05130) - 509746..510084 (+) 339 WP_000682120.1 LytTR family DNA-binding domain-containing protein -
  AAA982_RS02635 (TKY113292_05140) comE/blpR 510089..510826 (+) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  AAA982_RS02640 (TKY113292_05150) - 510840..512180 (+) 1341 WP_001017646.1 sensor histidine kinase -
  AAA982_RS02645 (TKY113292_05160) blpC 512251..512379 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27111.62 Da        Isoelectric Point: 4.7848

>NTDB_id=105794 AAA982_RS02615 WP_000889956.1 507196..507927(+) (pptA) [Streptococcus pneumoniae strain PF1]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQEDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFNMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=105794 AAA982_RS02615 WP_000889956.1 507196..507927(+) (pptA) [Streptococcus pneumoniae strain PF1]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTCCCTGTCTTGAAAGATGTGTCTTTTACTGTTGAAAGTGG
GCAGTTGGTTGGTTTGATTGGTCTCAATGGTGCTGGGAAATCGACGACGATTAATGAGATTATCGGTCTGTTGACACCTT
ATAGTGGTTCCATCAATATCAATGGCCTGACCCTGCAAGAAGATGCGACTAGTTACCGCAAGCAAATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCCATGGCTTATGGTATTGAGCAGAA
AGTGGCTTTTGAGCGAGTAGAGCCCTTGTTAAAAATGTTCCGTCTGGACCAGAAATTAGACTGGTTTCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTAGATCCGAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTGGATCCGCTGGCGATTGCAGACTTGATTCAGCTTTTGGAAGTGGAAAAGCAAAAGGGCAAGTCCATTCTTAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTTATTCTTCATAAGGGAGAGGTGCGTGCCAAGG
GAAATCTCCTGCAACTGCGCGAAGCCTTTAACATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAACTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment