Detailed information NTG1057911

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACFJI2_RS01440
• Genome accession: NZ_CP170549
• Coordinates: 313783..314652 (-)
• Length: 289 a.a.
• NCBI ID: WP_377703433.1
• Uniprot ID: -
• Organism: Pseudoduganella sp. UC29_71
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 308783..319652

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFJI2_RS01410 (ACFJI2_01410)	argJ	309527..310765 (+)	1239	WP_377703429.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
ACFJI2_RS01415 (ACFJI2_01415)	-	310767..311648 (+)	882	WP_377703430.1	ATP-binding protein	-
ACFJI2_RS01420 (ACFJI2_01420)	mutT	311649..312062 (+)	414	WP_377703431.1	8-oxo-dGTP diphosphatase MutT	-
ACFJI2_RS01425 (ACFJI2_01425)	yacG	312131..312301 (-)	171	WP_107876108.1	DNA gyrase inhibitor YacG	-
ACFJI2_RS01430 (ACFJI2_01430)	zapD	312311..313066 (-)	756	WP_107876110.1	cell division protein ZapD	-
ACFJI2_RS01435 (ACFJI2_01435)	coaE	313131..313781 (-)	651	WP_377703432.1	dephospho-CoA kinase	-
ACFJI2_RS01440 (ACFJI2_01440)	pilD	313783..314652 (-)	870	WP_377703433.1	prepilin peptidase	Machinery gene
ACFJI2_RS01445 (ACFJI2_01445)	-	314707..316134 (-)	1428	WP_377703434.1	sigma-54 interaction domain-containing protein	-
ACFJI2_RS01450 (ACFJI2_01450)	-	316388..317779 (+)	1392	WP_377703436.1	GntP family permease	-
ACFJI2_RS01455 (ACFJI2_01455)	-	317794..318573 (+)	780	WP_377703437.1	3-hydroxybutyrate dehydrogenase	-
ACFJI2_RS01460 (ACFJI2_01460)	-	318702..319283 (+)	582	WP_377703438.1	MEDS domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31021.84 Da
• Isoelectric Point: 7.7603

>NTDB_id=1057911 ACFJI2_RS01440 WP_377703433.1 313783..314652(-) (pilD) [Pseudoduganella sp. UC29_71]
MQDILLFAPPATLIAAIAAGIFGLLIGSFLNVVIHRLPIMMQRESDNYVASESGKDLPHTTRYNLVVPRSACPHCQHQIT
ALENIPVVSYLVLGGKCSNCKAKISPRYPIIEALTGLLSAALVWQFGSGWMGLATLFFAYMLIAMTFIDADTQLLPDDLT
LPLLWAGLLLNIHGMFVPLQDAVIGAAAGYLALWSIYWLFKLATGKEGMGYGDFKLLAALGAWLGWATLPTIILLSSVVG
AVVGISLMVFAKRGRNNPIPFGPYLAAAGMIALMYGGPLTAFTSHLLGQ

Nucleotide

• Length: 870 bp

>NTDB_id=1057911 ACFJI2_RS01440 WP_377703433.1 313783..314652(-) (pilD) [Pseudoduganella sp. UC29_71]
ATGCAGGATATCTTGCTGTTCGCCCCGCCCGCCACCCTGATTGCCGCCATTGCGGCCGGCATCTTCGGCCTGCTGATCGG
CAGCTTCCTGAACGTCGTCATCCACCGCCTGCCCATCATGATGCAGCGCGAGTCGGACAATTACGTGGCCTCGGAATCGG
GCAAGGACCTGCCGCACACCACACGCTACAACCTGGTCGTGCCGCGCTCGGCCTGCCCGCACTGCCAGCACCAGATCACC
GCGCTGGAAAACATCCCGGTGGTGAGCTACCTGGTCCTGGGCGGCAAATGCAGCAACTGCAAGGCGAAGATCTCGCCGCG
CTACCCCATCATCGAAGCGTTGACCGGCCTGCTGTCGGCCGCGCTGGTGTGGCAGTTCGGCAGCGGCTGGATGGGCCTGG
CGACCCTGTTCTTCGCCTATATGCTGATCGCCATGACCTTCATCGACGCCGACACCCAGCTGCTGCCGGACGACCTGACC
TTGCCGCTGCTGTGGGCCGGCCTGCTGCTCAACATCCATGGCATGTTCGTGCCGCTGCAGGACGCCGTGATCGGCGCGGC
GGCCGGCTACCTGGCGCTGTGGTCCATCTACTGGCTGTTCAAGCTGGCCACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGGCCACGCTGCCCACCATCATCCTGCTGTCGTCCGTGGTGGGC
GCGGTGGTCGGCATCAGCCTGATGGTGTTCGCCAAGCGCGGCCGCAACAACCCCATTCCCTTCGGCCCCTACCTGGCCGC
GGCCGGCATGATCGCCCTGATGTATGGCGGCCCGCTGACCGCCTTCACCTCCCACTTGCTGGGCCAGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.712	91.349	0.536
pilD	Vibrio campbellii strain DS40M4	55.682	91.349	0.509
pilD	Neisseria gonorrhoeae MS11	50.182	95.156	0.478
pilD	Acinetobacter baumannii D1279779	48.201	96.194	0.464
pilD	Acinetobacter nosocomialis M2	47.122	96.194	0.453