Detailed information NTG1057802

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: V6M93_RS05500
• Genome accession: NZ_CP170503
• Coordinates: 1231089..1231934 (+)
• Length: 281 a.a.
• NCBI ID: WP_379059577.1
• Uniprot ID: -
• Organism: Pectobacterium brasiliense strain BSRLOP2CAB
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1226089..1236934

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6M93_RS05470 (V6M93_05470)	gspI	1226481..1226846 (+)	366	WP_039284733.1	type II secretion system minor pseudopilin GspI	-
V6M93_RS05475 (V6M93_05475)	gspJ	1226936..1227496 (+)	561	WP_039284736.1	type II secretion system minor pseudopilin GspJ	-
V6M93_RS05480 (V6M93_05480)	gspK	1227493..1228479 (+)	987	WP_014916095.1	type II secretion system minor pseudopilin GspK	-
V6M93_RS05485 (V6M93_05485)	gspL	1228476..1229753 (+)	1278	WP_379059571.1	type II secretion system protein GspL	-
V6M93_RS05490 (V6M93_05490)	gspM	1229750..1230244 (+)	495	WP_379059573.1	type II secretion system protein GspM	-
V6M93_RS05495 (V6M93_05495)	-	1230234..1230980 (+)	747	WP_379059575.1	type II secretion system protein N	-
V6M93_RS05500 (V6M93_05500)	pilD	1231089..1231934 (+)	846	WP_379059577.1	prepilin peptidase	Machinery gene
V6M93_RS05505 (V6M93_05505)	ypdK	1232095..1232169 (-)	75	WP_099606229.1	membrane protein YpdK	-
V6M93_RS05510 (V6M93_05510)	-	1232527..1233552 (-)	1026	WP_039520406.1	LLM class flavin-dependent oxidoreductase	-
V6M93_RS05515 (V6M93_05515)	-	1233862..1234926 (+)	1065	WP_039520403.1	ABC transporter substrate-binding protein	-
V6M93_RS05520 (V6M93_05520)	-	1234923..1235960 (+)	1038	WP_080758910.1	iron ABC transporter permease	-
V6M93_RS05525 (V6M93_05525)	-	1235962..1236732 (+)	771	WP_039509456.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31412.37 Da
• Isoelectric Point: 5.7656

>NTDB_id=1057802 V6M93_RS05500 WP_379059577.1 1231089..1231934(+) (pilD) [Pectobacterium brasiliense strain BSRLOP2CAB]
MDDLREFAQLFPAWWFGSLGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELETGMVDSDPDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLTAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWIGLLFNLSETFVPLSDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLVWRGLRKEDTAKPLAFGPWLAMGGVFGVIMNGLNL

Nucleotide

• Length: 846 bp

>NTDB_id=1057802 V6M93_RS05500 WP_379059577.1 1231089..1231934(+) (pilD) [Pectobacterium brasiliense strain BSRLOP2CAB]
GTGGACGATTTAAGGGAATTTGCACAGCTGTTTCCGGCGTGGTGGTTTGGATCGCTGGGCGTGTTGGGATTGATTGTTGG
CAGTTTTCTAAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAACGG
GCATGGTCGATTCCGATCCTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGTCTTGTCCGCACTGCCAGCAGGCTATT
GCGGTGAAGGATAACATCCCACTATTCAGTTGGTTATGGCTGCGTGGCCGCTCTCGCTGCTGCCATCAATCGGTGTCTGT
GCAATATCCGTTAGTGGAAGTCATCACCATGCTGGCTTTTCTGACGGCAGGTTTACTCTGGCTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATTCTGCTGTCCTTCCTGTTGGTGCTGACCGTTATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATAGGGCTGCTGTTTAATCTGTCGGAGACCTTTGTCCCATTAAGTGATGCCGTAGTCGGCGC
GATGGCCGGCTATTTATCTCTGTGGCTACTTTATTGGGTATTCAAATACGCAACGGGCAAAGAGGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTTTTGGTGGCGGCGCTGAGC
GGGTTGGTCGTTACTCTCGTCTGGCGCGGGTTGCGTAAAGAGGATACGGCTAAACCGCTGGCCTTTGGCCCCTGGCTGGC
AATGGGAGGCGTGTTTGGCGTGATAATGAACGGATTGAATCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.554	96.441	0.488
pilD	Neisseria gonorrhoeae MS11	47.126	92.883	0.438
pilD	Vibrio campbellii strain DS40M4	44.981	95.73	0.431
pilD	Acinetobacter baumannii D1279779	41.392	97.153	0.402
pilD	Acinetobacter nosocomialis M2	41.026	97.153	0.399