Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VWC80_RS21350 Genome accession   NZ_CP170495
Coordinates   4161085..4162824 (-) Length   579 a.a.
NCBI ID   WP_000947765.1    Uniprot ID   A0A9X6T3J4
Organism   Bacillus thuringiensis strain IPPBIOTSUC-1012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4156085..4167824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VWC80_RS21320 (VWC80_21300) - 4156317..4156550 (+) 234 WP_016111657.1 DUF2627 domain-containing protein -
  VWC80_RS21325 (VWC80_21305) - 4156600..4157328 (-) 729 WP_000172580.1 glycerophosphodiester phosphodiesterase -
  VWC80_RS21330 (VWC80_21310) - 4157379..4157525 (+) 147 WP_001247671.1 YycC family protein -
  VWC80_RS21335 (VWC80_21315) - 4157767..4158330 (-) 564 WP_087875717.1 PRK06770 family protein -
  VWC80_RS21340 (VWC80_21320) spo0A 4158583..4159377 (-) 795 WP_021727703.1 sporulation transcription factor Spo0A Regulator
  VWC80_RS21345 (VWC80_21325) spoIVB 4159668..4160966 (-) 1299 WP_002098091.1 SpoIVB peptidase -
  VWC80_RS21350 (VWC80_21330) recN 4161085..4162824 (-) 1740 WP_000947765.1 DNA repair protein RecN Machinery gene
  VWC80_RS21355 (VWC80_21335) argR 4163089..4163538 (-) 450 WP_001032580.1 arginine repressor ArgR -
  VWC80_RS21360 (VWC80_21340) - 4163681..4164520 (-) 840 WP_000111874.1 TlyA family RNA methyltransferase -
  VWC80_RS21365 (VWC80_21345) dxs 4164524..4166416 (-) 1893 WP_000366454.1 1-deoxy-D-xylulose-5-phosphate synthase -
  VWC80_RS21370 (VWC80_21350) ispA 4166718..4167608 (-) 891 WP_000150374.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65852.94 Da        Isoelectric Point: 4.8277

>NTDB_id=1057748 VWC80_RS21350 WP_000947765.1 4161085..4162824(-) (recN) [Bacillus thuringiensis strain IPPBIOTSUC-1012]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNN
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVIMKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=1057748 VWC80_RS21350 WP_000947765.1 4161085..4162824(-) (recN) [Bacillus thuringiensis strain IPPBIOTSUC-1012]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCAATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGCTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGTATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCACG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GACATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAGCAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCACGAGGAAATTCGCAAGGCGGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCTTTAAGTGCC
GACGGACAAGGATTAGATAATGTAAGAAGTGCAATGGGGCAAATGGAAAGTATTACACATTTAGATGAAGTGTATCAAGA
GAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCCTATCAACTGAGGGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATTGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATAAT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAGGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTATGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACACCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCAGAAGAGCCCCTTGTGGAAGGTGCGCCGGTAAGACTTACGGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCAGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATCACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599

Multiple sequence alignment