Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   VWC80_RS21340 Genome accession   NZ_CP170495
Coordinates   4158583..4159377 (-) Length   264 a.a.
NCBI ID   WP_021727703.1    Uniprot ID   A0A9X3FF97
Organism   Bacillus thuringiensis strain IPPBIOTSUC-1012     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4153583..4164377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VWC80_RS21315 (VWC80_21295) - 4154107..4156179 (-) 2073 WP_087875716.1 sigma-54-dependent Fis family transcriptional regulator -
  VWC80_RS21320 (VWC80_21300) - 4156317..4156550 (+) 234 WP_016111657.1 DUF2627 domain-containing protein -
  VWC80_RS21325 (VWC80_21305) - 4156600..4157328 (-) 729 WP_000172580.1 glycerophosphodiester phosphodiesterase -
  VWC80_RS21330 (VWC80_21310) - 4157379..4157525 (+) 147 WP_001247671.1 YycC family protein -
  VWC80_RS21335 (VWC80_21315) - 4157767..4158330 (-) 564 WP_087875717.1 PRK06770 family protein -
  VWC80_RS21340 (VWC80_21320) spo0A 4158583..4159377 (-) 795 WP_021727703.1 sporulation transcription factor Spo0A Regulator
  VWC80_RS21345 (VWC80_21325) spoIVB 4159668..4160966 (-) 1299 WP_002098091.1 SpoIVB peptidase -
  VWC80_RS21350 (VWC80_21330) recN 4161085..4162824 (-) 1740 WP_000947765.1 DNA repair protein RecN Machinery gene
  VWC80_RS21355 (VWC80_21335) argR 4163089..4163538 (-) 450 WP_001032580.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29445.20 Da        Isoelectric Point: 7.1175

>NTDB_id=1057747 VWC80_RS21340 WP_021727703.1 4158583..4159377(-) (spo0A) [Bacillus thuringiensis strain IPPBIOTSUC-1012]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANTMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=1057747 VWC80_RS21340 WP_021727703.1 4158583..4159377(-) (spo0A) [Bacillus thuringiensis strain IPPBIOTSUC-1012]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAGAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTTGGCCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACACTATGATTAAGCGTCCAC
TACCATCATTCCGATCAGCCACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAATGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACAACAGCAAGCCGTGTGGAGCGCGCAATTC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment