Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOS_RS10390 Genome accession   NZ_CP170436
Coordinates   2103349..2103744 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t1510     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2098349..2108744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOS_RS10365 thiE 2098947..2099588 (-) 642 WP_000483162.1 thiamine phosphate synthase -
  ACFIOS_RS10370 thiM 2099590..2100381 (-) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  ACFIOS_RS10375 thiD 2100365..2101195 (-) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOS_RS10380 tenA 2101188..2101877 (-) 690 WP_000396063.1 thiaminase II -
  ACFIOS_RS10385 sceD 2102265..2102960 (-) 696 WP_000752011.1 lytic transglycosylase SceD -
  ACFIOS_RS10390 ssb 2103349..2103744 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOS_RS10395 - 2103938..2104378 (+) 441 WP_000846751.1 YwpF-like family protein -
  ACFIOS_RS10400 fabZ 2104434..2104874 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOS_RS10405 murA 2104908..2106173 (-) 1266 WP_000358005.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOS_RS10410 - 2106284..2106517 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOS_RS10415 - 2107114..2107518 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1057376 ACFIOS_RS10390 WP_000932694.1 2103349..2103744(-) (ssb) [Staphylococcus aureus strain t1510]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1057376 ACFIOS_RS10390 WP_000932694.1 2103349..2103744(-) (ssb) [Staphylococcus aureus strain t1510]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment