Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFIOS_RS04555 Genome accession   NZ_CP170436
Coordinates   950239..951225 (+) Length   328 a.a.
NCBI ID   WP_000959271.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t1510     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 945239..956225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOS_RS04530 opp4B 945451..946413 (+) 963 WP_000593421.1 oligopeptide ABC transporter permease -
  ACFIOS_RS04535 opp4C 946425..947306 (+) 882 WP_001180265.1 oligopeptide ABC transporter permease -
  ACFIOS_RS04540 trpS 947348..948337 (-) 990 WP_000448938.1 tryptophan--tRNA ligase -
  ACFIOS_RS04545 spxA 948632..949027 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACFIOS_RS04550 mecA 949399..950118 (+) 720 WP_001217728.1 adaptor protein MecA -
  ACFIOS_RS04555 coiA 950239..951225 (+) 987 WP_000959271.1 competence protein CoiA Machinery gene
  ACFIOS_RS04560 pepF 951273..953081 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  ACFIOS_RS04565 yjbH 953541..954347 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  ACFIOS_RS04570 - 954370..954735 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  ACFIOS_RS04575 - 954839..955432 (-) 594 WP_000224615.1 CYTH domain-containing protein -
  ACFIOS_RS04580 - 955618..955965 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38849.49 Da        Isoelectric Point: 9.7732

>NTDB_id=1057350 ACFIOS_RS04555 WP_000959271.1 950239..951225(+) (coiA) [Staphylococcus aureus strain t1510]
MLVALNEEKERVLATTALRKIKYFCPVCGKQVILKRGLKVISHFAHKHLTEQKCFNNESFKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSIFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSNR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1057350 ACFIOS_RS04555 WP_000959271.1 950239..951225(+) (coiA) [Staphylococcus aureus strain t1510]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGATAAAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAACGGAACAAAAAT
GTTTTAATAATGAATCGTTTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAACCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATATTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATACTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAAATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.037

100

0.96
  coiA Staphylococcus aureus MW2

95.732

100

0.957

Multiple sequence alignment