Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFIOS_RS02580 Genome accession   NZ_CP170436
Coordinates   546840..547409 (+) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t1510     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 541840..552409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOS_RS02555 cysE 543053..543700 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACFIOS_RS02560 cysS 543684..545084 (+) 1401 WP_000631980.1 cysteine--tRNA ligase -
  ACFIOS_RS02565 - 545077..545481 (+) 405 WP_000370179.1 Mini-ribonuclease 3 -
  ACFIOS_RS02570 rlmB 545489..546235 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFIOS_RS02575 - 546235..546759 (+) 525 WP_000664731.1 NYN domain-containing protein -
  ACFIOS_RS02580 sigH 546840..547409 (+) 570 WP_000872878.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFIOS_RS02585 rpmG 547524..547667 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFIOS_RS02590 secE 547723..547905 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFIOS_RS02595 nusG 547918..548466 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFIOS_RS02600 rplK 548647..549069 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFIOS_RS02605 rplA 549277..549969 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFIOS_RS02610 rplJ 550241..550741 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACFIOS_RS02615 rplL 550785..551153 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFIOS_RS02620 - 551328..551936 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=1057345 ACFIOS_RS02580 WP_000872878.1 546840..547409(+) (sigH) [Staphylococcus aureus strain t1510]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1057345 ACFIOS_RS02580 WP_000872878.1 546840..547409(+) (sigH) [Staphylococcus aureus strain t1510]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment