Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFIOK_RS11150 Genome accession   NZ_CP170434
Coordinates   2225879..2226448 (-) Length   189 a.a.
NCBI ID   WP_200654650.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t315     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2220879..2231448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOK_RS11110 - 2221353..2221961 (-) 609 WP_410540870.1 class I SAM-dependent methyltransferase -
  ACFIOK_RS11115 rplL 2222136..2222504 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFIOK_RS11120 rplJ 2222547..2223047 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACFIOK_RS11125 rplA 2223319..2224011 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFIOK_RS11130 rplK 2224219..2224641 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFIOK_RS11135 nusG 2224822..2225370 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFIOK_RS11140 secE 2225383..2225565 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFIOK_RS11145 rpmG 2225621..2225764 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFIOK_RS11150 sigH 2225879..2226448 (-) 570 WP_200654650.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFIOK_RS11155 - 2226529..2227053 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACFIOK_RS11160 rlmB 2227053..2227799 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFIOK_RS11165 - 2227807..2228211 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACFIOK_RS11170 cysS 2228204..2229604 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  ACFIOK_RS11175 cysE 2229588..2230235 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23124.04 Da        Isoelectric Point: 9.6015

>NTDB_id=1057332 ACFIOK_RS11150 WP_200654650.1 2225879..2226448(-) (sigH) [Staphylococcus aureus strain t315]
MKYDLTTQDITIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1057332 ACFIOK_RS11150 WP_200654650.1 2225879..2226448(-) (sigH) [Staphylococcus aureus strain t315]
TTGAAATACGATTTGACAACTCAAGACATTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAACCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment