Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFIOK_RS09255 Genome accession   NZ_CP170434
Coordinates   1836135..1837121 (-) Length   328 a.a.
NCBI ID   WP_410540861.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t315     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1831135..1842121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOK_RS09230 - 1831395..1831742 (-) 348 WP_001242102.1 hypothetical protein -
  ACFIOK_RS09235 - 1831928..1832521 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  ACFIOK_RS09240 - 1832625..1832990 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  ACFIOK_RS09245 yjbH 1833013..1833819 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  ACFIOK_RS09250 pepF 1834279..1836087 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  ACFIOK_RS09255 coiA 1836135..1837121 (-) 987 WP_410540861.1 competence protein CoiA Machinery gene
  ACFIOK_RS09260 mecA 1837242..1837961 (-) 720 WP_001217728.1 adaptor protein MecA -
  ACFIOK_RS09265 spxA 1838332..1838727 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACFIOK_RS09270 trpS 1839022..1840011 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  ACFIOK_RS09275 opp4C 1840053..1840934 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  ACFIOK_RS09280 opp4B 1840946..1841908 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38806.39 Da        Isoelectric Point: 9.5881

>NTDB_id=1057327 ACFIOK_RS09255 WP_410540861.1 1836135..1837121(-) (coiA) [Staphylococcus aureus strain t315]
MLVALNEEKERVLATTALRKTQYFCPVCSKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAIYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1057327 ACFIOK_RS09255 WP_410540861.1 1836135..1837121(-) (coiA) [Staphylococcus aureus strain t315]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTAGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATATATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.171

100

0.982
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment