Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACFIOK_RS06175 Genome accession   NZ_CP170434
Coordinates   1183757..1184443 (+) Length   228 a.a.
NCBI ID   WP_078064814.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t315     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1178757..1189443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOK_RS06140 yqeH 1179284..1180384 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  ACFIOK_RS06145 aroE 1180398..1181204 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  ACFIOK_RS06150 yhbY 1181208..1181498 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  ACFIOK_RS06155 nadD 1181501..1182070 (+) 570 WP_000725168.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACFIOK_RS06160 yqeK 1182060..1182644 (+) 585 WP_001019322.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACFIOK_RS06165 rsfS 1182645..1182998 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACFIOK_RS06170 - 1183001..1183717 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ACFIOK_RS06175 comEA 1183757..1184443 (+) 687 WP_078064814.1 ComEA family DNA-binding protein Machinery gene
  ACFIOK_RS06180 - 1184535..1184996 (+) 462 WP_000439691.1 ComE operon protein 2 -
  ACFIOK_RS06185 - 1185541..1187201 (+) 1661 Protein_1182 DNA internalization-related competence protein ComEC/Rec2 -
  ACFIOK_RS06190 holA 1187258..1188232 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  ACFIOK_RS06195 rpsT 1188277..1188528 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25842.52 Da        Isoelectric Point: 9.5276

>NTDB_id=1057314 ACFIOK_RS06175 WP_078064814.1 1183757..1184443(+) (comEA) [Staphylococcus aureus strain t315]
MVLLYQFLLHYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1057314 ACFIOK_RS06175 WP_078064814.1 1183757..1184443(+) (comEA) [Staphylococcus aureus strain t315]
GTGGTTTTATTGTATCAATTTTTATTACACTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.119

99.561

0.987
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969

Multiple sequence alignment