Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOK_RS03235 Genome accession   NZ_CP170434
Coordinates   647840..648235 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t315     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 642840..653235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOK_RS03205 - 644066..644470 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACFIOK_RS03210 - 644841..644933 (+) 93 WP_031864518.1 hypothetical protein -
  ACFIOK_RS03215 - 645065..645298 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOK_RS03220 murA 645409..646674 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOK_RS03225 fabZ 646708..647148 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOK_RS03230 - 647206..647646 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOK_RS03235 ssb 647840..648235 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOK_RS03240 sceD 648624..649319 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  ACFIOK_RS03245 tenA 649900..650589 (+) 690 WP_000396059.1 thiaminase II -
  ACFIOK_RS03250 thiD 650582..651412 (+) 831 WP_000594948.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOK_RS03255 thiM 651396..652187 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  ACFIOK_RS03260 thiE 652189..652830 (+) 642 WP_000483164.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1057302 ACFIOK_RS03235 WP_000932694.1 647840..648235(+) (ssb) [Staphylococcus aureus strain t315]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1057302 ACFIOK_RS03235 WP_000932694.1 647840..648235(+) (ssb) [Staphylococcus aureus strain t315]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment