Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFIOI_RS11710 Genome accession   NZ_CP170432
Coordinates   2304486..2305055 (-) Length   189 a.a.
NCBI ID   WP_061393978.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t1476     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2299486..2310055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOI_RS11670 - 2299960..2300568 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  ACFIOI_RS11675 rplL 2300743..2301111 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFIOI_RS11680 rplJ 2301154..2301654 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACFIOI_RS11685 rplA 2301926..2302618 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFIOI_RS11690 rplK 2302826..2303248 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFIOI_RS11695 nusG 2303429..2303977 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFIOI_RS11700 secE 2303990..2304172 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFIOI_RS11705 rpmG 2304228..2304371 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFIOI_RS11710 sigH 2304486..2305055 (-) 570 WP_061393978.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFIOI_RS11715 - 2305136..2305660 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACFIOI_RS11720 rlmB 2305660..2306406 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFIOI_RS11725 - 2306414..2306818 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACFIOI_RS11730 cysS 2306811..2308211 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  ACFIOI_RS11735 cysE 2308195..2308842 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23018.87 Da        Isoelectric Point: 9.4170

>NTDB_id=1057292 ACFIOI_RS11710 WP_061393978.1 2304486..2305055(-) (sigH) [Staphylococcus aureus strain t1476]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKSREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1057292 ACFIOI_RS11710 WP_061393978.1 2304486..2305055(-) (sigH) [Staphylococcus aureus strain t1476]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGTCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment