Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFIOI_RS09635 Genome accession   NZ_CP170432
Coordinates   1893757..1894743 (-) Length   328 a.a.
NCBI ID   WP_000959287.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t1476     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1888757..1899743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOI_RS09610 - 1889017..1889364 (-) 348 WP_001242101.1 hypothetical protein -
  ACFIOI_RS09615 - 1889550..1890143 (+) 594 WP_410531871.1 CYTH domain-containing protein -
  ACFIOI_RS09620 - 1890247..1890612 (+) 366 WP_000214065.1 truncated hemoglobin YjbI -
  ACFIOI_RS09625 yjbH 1890635..1891441 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  ACFIOI_RS09630 pepF 1891901..1893709 (-) 1809 WP_000082731.1 oligoendopeptidase F -
  ACFIOI_RS09635 coiA 1893757..1894743 (-) 987 WP_000959287.1 competence protein CoiA Machinery gene
  ACFIOI_RS09640 mecA 1894864..1895583 (-) 720 WP_001217730.1 adaptor protein MecA -
  ACFIOI_RS09645 spxA 1895954..1896349 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACFIOI_RS09650 trpS 1896644..1897633 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  ACFIOI_RS09655 opp4C 1897675..1898556 (-) 882 WP_001180262.1 oligopeptide ABC transporter permease -
  ACFIOI_RS09660 opp4B 1898568..1899530 (-) 963 WP_000593417.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38840.52 Da        Isoelectric Point: 9.7121

>NTDB_id=1057287 ACFIOI_RS09635 WP_000959287.1 1893757..1894743(-) (coiA) [Staphylococcus aureus strain t1476]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1057287 ACFIOI_RS09635 WP_000959287.1 1893757..1894743(-) (coiA) [Staphylococcus aureus strain t1476]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.866

100

0.979

Multiple sequence alignment