Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOI_RS03325 Genome accession   NZ_CP170432
Coordinates   661078..661473 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t1476     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 656078..666473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOI_RS03295 - 657336..657740 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACFIOI_RS03300 - 658078..658170 (+) 93 WP_001790611.1 hypothetical protein -
  ACFIOI_RS03305 - 658302..658535 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOI_RS03310 murA 658646..659911 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOI_RS03315 fabZ 659945..660385 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOI_RS03320 - 660444..660884 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOI_RS03325 ssb 661078..661473 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOI_RS03330 sceD 661862..662557 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  ACFIOI_RS03335 tenA 662943..663632 (+) 690 WP_000396077.1 thiaminase II -
  ACFIOI_RS03340 thiD 663625..664455 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOI_RS03345 thiM 664439..665230 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  ACFIOI_RS03350 thiE 665232..665873 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1057259 ACFIOI_RS03325 WP_000932694.1 661078..661473(+) (ssb) [Staphylococcus aureus strain t1476]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1057259 ACFIOI_RS03325 WP_000932694.1 661078..661473(+) (ssb) [Staphylococcus aureus strain t1476]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment