Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFIOD_RS09065 Genome accession   NZ_CP170429
Coordinates   1799427..1800413 (-) Length   328 a.a.
NCBI ID   WP_054194434.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t1531     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1794427..1805413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOD_RS09040 - 1794687..1795034 (-) 348 WP_001242103.1 hypothetical protein -
  ACFIOD_RS09045 - 1795220..1795813 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  ACFIOD_RS09050 - 1795917..1796282 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  ACFIOD_RS09055 yjbH 1796305..1797111 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  ACFIOD_RS09060 pepF 1797571..1799379 (-) 1809 WP_410540973.1 oligoendopeptidase F -
  ACFIOD_RS09065 coiA 1799427..1800413 (-) 987 WP_054194434.1 competence protein CoiA Machinery gene
  ACFIOD_RS09070 mecA 1800534..1801253 (-) 720 WP_001217728.1 adaptor protein MecA -
  ACFIOD_RS09075 spxA 1801624..1802019 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACFIOD_RS09080 trpS 1802313..1803301 (+) 989 Protein_1757 tryptophan--tRNA ligase -
  ACFIOD_RS09085 opp4C 1803343..1804224 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  ACFIOD_RS09090 opp4B 1804236..1805198 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38877.61 Da        Isoelectric Point: 9.6990

>NTDB_id=1057244 ACFIOD_RS09065 WP_054194434.1 1799427..1800413(-) (coiA) [Staphylococcus aureus strain t1531]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKKIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1057244 ACFIOD_RS09065 WP_054194434.1 1799427..1800413(-) (coiA) [Staphylococcus aureus strain t1531]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAAAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

99.695

100

0.997
  coiA Staphylococcus aureus MW2

97.256

100

0.973

Multiple sequence alignment