Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOD_RS03265 Genome accession   NZ_CP170429
Coordinates   652376..652771 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t1531     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 647376..657771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOD_RS03235 - 648635..649039 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACFIOD_RS03240 - 649377..649469 (+) 93 WP_001790611.1 hypothetical protein -
  ACFIOD_RS03245 - 649601..649834 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOD_RS03250 murA 649945..651210 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOD_RS03255 fabZ 651244..651684 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOD_RS03260 - 651742..652182 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOD_RS03265 ssb 652376..652771 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOD_RS03270 sceD 653160..653855 (+) 696 WP_054194472.1 lytic transglycosylase SceD -
  ACFIOD_RS03275 tenA 654242..654931 (+) 690 WP_000396077.1 thiaminase II -
  ACFIOD_RS03280 thiD 654924..655754 (+) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOD_RS03285 thiM 655738..656529 (+) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  ACFIOD_RS03290 thiE 656531..657172 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1057217 ACFIOD_RS03265 WP_000932694.1 652376..652771(+) (ssb) [Staphylococcus aureus strain t1531]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1057217 ACFIOD_RS03265 WP_000932694.1 652376..652771(+) (ssb) [Staphylococcus aureus strain t1531]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment