Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOU_RS11105 Genome accession   NZ_CP170426
Coordinates   2188743..2189138 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t1492     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2183743..2194138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOU_RS11080 thiE 2184149..2184790 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  ACFIOU_RS11085 thiM 2184792..2185583 (-) 792 WP_001108480.1 hydroxyethylthiazole kinase -
  ACFIOU_RS11090 thiD 2185567..2186397 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOU_RS11095 tenA 2186390..2187079 (-) 690 WP_000396079.1 thiaminase II -
  ACFIOU_RS11100 sceD 2187659..2188354 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  ACFIOU_RS11105 ssb 2188743..2189138 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOU_RS11110 - 2189332..2189772 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOU_RS11115 fabZ 2189831..2190271 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOU_RS11120 murA 2190305..2191570 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOU_RS11125 - 2191681..2191914 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOU_RS11130 - 2192046..2192138 (-) 93 WP_031835036.1 hypothetical protein -
  ACFIOU_RS11135 - 2192475..2192879 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1057208 ACFIOU_RS11105 WP_000932694.1 2188743..2189138(-) (ssb) [Staphylococcus aureus strain t1492]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1057208 ACFIOU_RS11105 WP_000932694.1 2188743..2189138(-) (ssb) [Staphylococcus aureus strain t1492]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment