Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACFIOU_RS08665 Genome accession   NZ_CP170426
Coordinates   1727181..1727867 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t1492     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1722181..1732867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOU_RS08645 rpsT 1723095..1723346 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ACFIOU_RS08650 holA 1723391..1724365 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  ACFIOU_RS08655 comEC 1724422..1726623 (-) 2202 WP_001641560.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACFIOU_RS08660 - 1726628..1727089 (-) 462 WP_000439693.1 ComE operon protein 2 -
  ACFIOU_RS08665 comEA 1727181..1727867 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  ACFIOU_RS08670 - 1727907..1728623 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ACFIOU_RS08675 rsfS 1728626..1728979 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACFIOU_RS08680 yqeK 1728980..1729564 (-) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACFIOU_RS08685 nadD 1729554..1730123 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACFIOU_RS08690 yhbY 1730126..1730416 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  ACFIOU_RS08695 aroE 1730420..1731226 (-) 807 WP_000666744.1 shikimate dehydrogenase -
  ACFIOU_RS08700 yqeH 1731240..1732340 (-) 1101 WP_410540704.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=1057197 ACFIOU_RS08665 WP_001788928.1 1727181..1727867(-) (comEA) [Staphylococcus aureus strain t1492]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1057197 ACFIOU_RS08665 WP_001788928.1 1727181..1727867(-) (comEA) [Staphylococcus aureus strain t1492]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969

Multiple sequence alignment