Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFIOU_RS02435 Genome accession   NZ_CP170426
Coordinates   519461..520030 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t1492     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 514461..525030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOU_RS02410 cysE 515674..516321 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACFIOU_RS02415 cysS 516305..517705 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  ACFIOU_RS02420 - 517698..518102 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACFIOU_RS02425 rlmB 518110..518856 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFIOU_RS02430 - 518856..519380 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACFIOU_RS02435 sigH 519461..520030 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFIOU_RS02440 rpmG 520145..520288 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFIOU_RS02445 secE 520344..520526 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFIOU_RS02450 nusG 520539..521087 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFIOU_RS02455 rplK 521268..521690 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFIOU_RS02460 rplA 521898..522590 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFIOU_RS02465 rplJ 522862..523362 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACFIOU_RS02470 rplL 523405..523773 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFIOU_RS02475 - 523948..524556 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=1057174 ACFIOU_RS02435 WP_000872873.1 519461..520030(+) (sigH) [Staphylococcus aureus strain t1492]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1057174 ACFIOU_RS02435 WP_000872873.1 519461..520030(+) (sigH) [Staphylococcus aureus strain t1492]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment