Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOM_RS11110 Genome accession   NZ_CP170425
Coordinates   2213083..2213478 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t197     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2208083..2218478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOM_RS11085 thiE 2208683..2209324 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  ACFIOM_RS11090 thiM 2209326..2210117 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  ACFIOM_RS11095 thiD 2210101..2210931 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOM_RS11100 tenA 2210924..2211613 (-) 690 WP_000396077.1 thiaminase II -
  ACFIOM_RS11105 sceD 2211999..2212694 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  ACFIOM_RS11110 ssb 2213083..2213478 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOM_RS11115 - 2213672..2214112 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOM_RS11120 fabZ 2214171..2214611 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOM_RS11125 murA 2214645..2215910 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOM_RS11130 - 2216021..2216254 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOM_RS11135 - 2216386..2216478 (-) 93 WP_001790611.1 hypothetical protein -
  ACFIOM_RS11140 - 2216816..2217220 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1057164 ACFIOM_RS11110 WP_000932694.1 2213083..2213478(-) (ssb) [Staphylococcus aureus strain t197]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1057164 ACFIOM_RS11110 WP_000932694.1 2213083..2213478(-) (ssb) [Staphylococcus aureus strain t197]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment