Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFIOM_RS04800 Genome accession   NZ_CP170425
Coordinates   979735..980721 (+) Length   328 a.a.
NCBI ID   WP_000959287.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t197     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 974735..985721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOM_RS04775 opp4B 974948..975910 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  ACFIOM_RS04780 opp4C 975922..976803 (+) 882 WP_001180262.1 oligopeptide ABC transporter permease -
  ACFIOM_RS04785 trpS 976845..977834 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  ACFIOM_RS04790 spxA 978129..978524 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACFIOM_RS04795 mecA 978895..979614 (+) 720 WP_001217730.1 adaptor protein MecA -
  ACFIOM_RS04800 coiA 979735..980721 (+) 987 WP_000959287.1 competence protein CoiA Machinery gene
  ACFIOM_RS04805 pepF 980769..982577 (+) 1809 WP_000082731.1 oligoendopeptidase F -
  ACFIOM_RS04810 yjbH 983036..983842 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  ACFIOM_RS04815 - 983865..984230 (-) 366 WP_000214065.1 truncated hemoglobin YjbI -
  ACFIOM_RS04820 - 984334..984927 (-) 594 WP_410531871.1 CYTH domain-containing protein -
  ACFIOM_RS04825 - 985113..985460 (+) 348 WP_001242101.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38840.52 Da        Isoelectric Point: 9.7121

>NTDB_id=1057137 ACFIOM_RS04800 WP_000959287.1 979735..980721(+) (coiA) [Staphylococcus aureus strain t197]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1057137 ACFIOM_RS04800 WP_000959287.1 979735..980721(+) (coiA) [Staphylococcus aureus strain t197]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.866

100

0.979

Multiple sequence alignment