Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFIOM_RS02725 Genome accession   NZ_CP170425
Coordinates   569354..569923 (+) Length   189 a.a.
NCBI ID   WP_061393978.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t197     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 564354..574923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOM_RS02700 cysE 565567..566214 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACFIOM_RS02705 cysS 566198..567598 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  ACFIOM_RS02710 - 567591..567995 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACFIOM_RS02715 rlmB 568003..568749 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFIOM_RS02720 - 568749..569273 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACFIOM_RS02725 sigH 569354..569923 (+) 570 WP_061393978.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFIOM_RS02730 rpmG 570038..570181 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFIOM_RS02735 secE 570237..570419 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFIOM_RS02740 nusG 570432..570980 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFIOM_RS02745 rplK 571161..571583 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFIOM_RS02750 rplA 571791..572483 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFIOM_RS02755 rplJ 572755..573255 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACFIOM_RS02760 rplL 573298..573666 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFIOM_RS02765 - 573841..574449 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23018.87 Da        Isoelectric Point: 9.4170

>NTDB_id=1057132 ACFIOM_RS02725 WP_061393978.1 569354..569923(+) (sigH) [Staphylococcus aureus strain t197]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKSREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1057132 ACFIOM_RS02725 WP_061393978.1 569354..569923(+) (sigH) [Staphylococcus aureus strain t197]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGTCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment