Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOG_RS10710 Genome accession   NZ_CP170422
Coordinates   2137472..2137867 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t7558     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2132472..2142867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOG_RS10685 thiE 2133071..2133712 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  ACFIOG_RS10690 thiM 2133714..2134505 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  ACFIOG_RS10695 thiD 2134489..2135319 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOG_RS10700 tenA 2135312..2136001 (-) 690 WP_000396077.1 thiaminase II -
  ACFIOG_RS10705 sceD 2136388..2137083 (-) 696 WP_000752004.1 lytic transglycosylase SceD -
  ACFIOG_RS10710 ssb 2137472..2137867 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOG_RS10715 - 2138061..2138501 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOG_RS10720 fabZ 2138560..2139000 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOG_RS10725 murA 2139034..2140299 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOG_RS10730 - 2140410..2140643 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOG_RS10735 - 2140775..2140867 (-) 93 WP_001790611.1 hypothetical protein -
  ACFIOG_RS10740 - 2141205..2141609 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1057122 ACFIOG_RS10710 WP_000932694.1 2137472..2137867(-) (ssb) [Staphylococcus aureus strain t7558]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1057122 ACFIOG_RS10710 WP_000932694.1 2137472..2137867(-) (ssb) [Staphylococcus aureus strain t7558]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment