Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACFIOG_RS07990 Genome accession   NZ_CP170422
Coordinates   1638841..1639527 (-) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t7558     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1633841..1644527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOG_RS07970 rpsT 1634755..1635006 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ACFIOG_RS07975 holA 1635051..1636025 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACFIOG_RS07980 comEC 1636082..1638283 (-) 2202 WP_025175028.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACFIOG_RS07985 - 1638288..1638749 (-) 462 WP_000439693.1 ComE operon protein 2 -
  ACFIOG_RS07990 comEA 1638841..1639527 (-) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  ACFIOG_RS07995 - 1639567..1640283 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ACFIOG_RS08000 rsfS 1640286..1640639 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACFIOG_RS08005 yqeK 1640640..1641224 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACFIOG_RS08010 nadD 1641214..1641783 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACFIOG_RS08015 yhbY 1641786..1642076 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  ACFIOG_RS08020 aroE 1642080..1642886 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  ACFIOG_RS08025 yqeH 1642900..1644000 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=1057110 ACFIOG_RS07990 WP_072353822.1 1638841..1639527(-) (comEA) [Staphylococcus aureus strain t7558]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1057110 ACFIOG_RS07990 WP_072353822.1 1638841..1639527(-) (comEA) [Staphylococcus aureus strain t7558]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978

Multiple sequence alignment