Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFIOG_RS04915 Genome accession   NZ_CP170422
Coordinates   989806..990792 (+) Length   328 a.a.
NCBI ID   WP_000959284.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t7558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 984806..995792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOG_RS04890 opp4B 985019..985981 (+) 963 WP_000239818.1 oligopeptide ABC transporter permease -
  ACFIOG_RS04895 opp4C 985993..986874 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  ACFIOG_RS04900 trpS 986916..987905 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  ACFIOG_RS04905 spxA 988200..988595 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACFIOG_RS04910 mecA 988966..989685 (+) 720 WP_001217728.1 adaptor protein MecA -
  ACFIOG_RS04915 coiA 989806..990792 (+) 987 WP_000959284.1 competence protein CoiA Machinery gene
  ACFIOG_RS04920 pepF 990840..992648 (+) 1809 WP_000082728.1 oligoendopeptidase F -
  ACFIOG_RS04925 yjbH 993109..993915 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  ACFIOG_RS04930 - 993938..994303 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  ACFIOG_RS04935 - 994407..995000 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  ACFIOG_RS04940 - 995186..995533 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38810.39 Da        Isoelectric Point: 9.5881

>NTDB_id=1057095 ACFIOG_RS04915 WP_000959284.1 989806..990792(+) (coiA) [Staphylococcus aureus strain t7558]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1057095 ACFIOG_RS04915 WP_000959284.1 989806..990792(+) (coiA) [Staphylococcus aureus strain t7558]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTATTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982

Multiple sequence alignment