Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFIOG_RS02585 Genome accession   NZ_CP170422
Coordinates   548861..549430 (+) Length   189 a.a.
NCBI ID   WP_000872881.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t7558     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 543861..554430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOG_RS02560 cysE 545074..545721 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACFIOG_RS02565 cysS 545705..547105 (+) 1401 WP_000631966.1 cysteine--tRNA ligase -
  ACFIOG_RS02570 - 547098..547502 (+) 405 WP_000370185.1 Mini-ribonuclease 3 -
  ACFIOG_RS02575 rlmB 547510..548256 (+) 747 WP_000390338.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFIOG_RS02580 - 548256..548780 (+) 525 WP_000664732.1 NYN domain-containing protein -
  ACFIOG_RS02585 sigH 548861..549430 (+) 570 WP_000872881.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFIOG_RS02590 rpmG 549545..549688 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFIOG_RS02595 secE 549744..549926 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFIOG_RS02600 nusG 549939..550487 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFIOG_RS02605 rplK 550668..551090 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFIOG_RS02610 rplA 551298..551990 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFIOG_RS02615 rplJ 552262..552762 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACFIOG_RS02620 rplL 552805..553173 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFIOG_RS02625 - 553348..553956 (+) 609 WP_000020306.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23096.97 Da        Isoelectric Point: 9.6924

>NTDB_id=1057090 ACFIOG_RS02585 WP_000872881.1 548861..549430(+) (sigH) [Staphylococcus aureus strain t7558]
MKYDLTTQDSTIKRNNAINDKDFEKLVMNLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1057090 ACFIOG_RS02585 WP_000872881.1 548861..549430(+) (sigH) [Staphylococcus aureus strain t7558]
TTGAAATATGATTTGACAACGCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGAATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTTATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment