Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOC_RS10845 Genome accession   NZ_CP170419
Coordinates   2148356..2148751 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t062     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2143356..2153751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOC_RS10820 thiE 2143955..2144596 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  ACFIOC_RS10825 thiM 2144598..2145389 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  ACFIOC_RS10830 thiD 2145373..2146203 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOC_RS10835 tenA 2146196..2146885 (-) 690 WP_000396077.1 thiaminase II -
  ACFIOC_RS10840 sceD 2147272..2147967 (-) 696 WP_054194472.1 lytic transglycosylase SceD -
  ACFIOC_RS10845 ssb 2148356..2148751 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOC_RS10850 - 2148945..2149385 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOC_RS10855 fabZ 2149443..2149883 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOC_RS10860 murA 2149917..2151182 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOC_RS10865 - 2151293..2151526 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOC_RS10870 - 2151658..2151750 (-) 93 WP_001790611.1 hypothetical protein -
  ACFIOC_RS10875 - 2152088..2152492 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1057078 ACFIOC_RS10845 WP_000932694.1 2148356..2148751(-) (ssb) [Staphylococcus aureus strain t062]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1057078 ACFIOC_RS10845 WP_000932694.1 2148356..2148751(-) (ssb) [Staphylococcus aureus strain t062]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment