Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFIOC_RS04710 Genome accession   NZ_CP170419
Coordinates   957799..958785 (+) Length   328 a.a.
NCBI ID   WP_054194434.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t062     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 952799..963785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOC_RS04685 opp4B 953013..953975 (+) 963 WP_000915997.1 oligopeptide ABC transporter permease -
  ACFIOC_RS04690 opp4C 953987..954868 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  ACFIOC_RS04695 trpS 954910..955899 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  ACFIOC_RS04700 spxA 956193..956588 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACFIOC_RS04705 mecA 956959..957678 (+) 720 WP_001217728.1 adaptor protein MecA -
  ACFIOC_RS04710 coiA 957799..958785 (+) 987 WP_054194434.1 competence protein CoiA Machinery gene
  ACFIOC_RS04715 pepF 958833..960641 (+) 1809 WP_410540973.1 oligoendopeptidase F -
  ACFIOC_RS04720 yjbH 961101..961907 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  ACFIOC_RS04725 - 961930..962295 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  ACFIOC_RS04730 - 962399..962992 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  ACFIOC_RS04735 - 963178..963525 (+) 348 WP_001242103.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38877.61 Da        Isoelectric Point: 9.6990

>NTDB_id=1057051 ACFIOC_RS04710 WP_054194434.1 957799..958785(+) (coiA) [Staphylococcus aureus strain t062]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKKIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1057051 ACFIOC_RS04710 WP_054194434.1 957799..958785(+) (coiA) [Staphylococcus aureus strain t062]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAAAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

99.695

100

0.997
  coiA Staphylococcus aureus MW2

97.256

100

0.973

Multiple sequence alignment