Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFIOL_RS11615 Genome accession   NZ_CP170416
Coordinates   2297841..2298410 (-) Length   189 a.a.
NCBI ID   WP_410531227.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21644     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2292841..2303410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOL_RS11575 - 2293315..2293923 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  ACFIOL_RS11580 rplL 2294098..2294466 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFIOL_RS11585 rplJ 2294509..2295009 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  ACFIOL_RS11590 rplA 2295281..2295973 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFIOL_RS11595 rplK 2296181..2296603 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFIOL_RS11600 nusG 2296784..2297332 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFIOL_RS11605 secE 2297345..2297527 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFIOL_RS11610 rpmG 2297583..2297726 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFIOL_RS11615 sigH 2297841..2298410 (-) 570 WP_410531227.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFIOL_RS11620 - 2298491..2299015 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACFIOL_RS11625 rlmB 2299015..2299761 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFIOL_RS11630 - 2299769..2300173 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACFIOL_RS11635 cysS 2300166..2301566 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  ACFIOL_RS11640 cysE 2301550..2302197 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23135.02 Da        Isoelectric Point: 9.6016

>NTDB_id=1057034 ACFIOL_RS11615 WP_410531227.1 2297841..2298410(-) (sigH) [Staphylococcus aureus strain t21644]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSVFEKDVMYLMCEQYKPREI
AHLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1057034 ACFIOL_RS11615 WP_410531227.1 2297841..2298410(-) (sigH) [Staphylococcus aureus strain t21644]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGTATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCATCTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment