Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFIOT_RS11430 Genome accession   NZ_CP170414
Coordinates   2282236..2282805 (-) Length   189 a.a.
NCBI ID   WP_054190481.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t5047     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2277236..2287805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOT_RS11390 - 2277711..2278319 (-) 609 WP_054190480.1 class I SAM-dependent methyltransferase -
  ACFIOT_RS11395 rplL 2278494..2278862 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFIOT_RS11400 rplJ 2278904..2279404 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACFIOT_RS11405 rplA 2279676..2280368 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFIOT_RS11410 rplK 2280576..2280998 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFIOT_RS11415 nusG 2281179..2281727 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFIOT_RS11420 secE 2281740..2281922 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFIOT_RS11425 rpmG 2281978..2282121 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFIOT_RS11430 sigH 2282236..2282805 (-) 570 WP_054190481.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFIOT_RS11435 - 2282886..2283410 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACFIOT_RS11440 rlmB 2283410..2284156 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFIOT_RS11445 - 2284164..2284568 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACFIOT_RS11450 cysS 2284561..2285961 (-) 1401 WP_054190482.1 cysteine--tRNA ligase -
  ACFIOT_RS11455 cysE 2285945..2286592 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23085.90 Da        Isoelectric Point: 9.6015

>NTDB_id=1056993 ACFIOT_RS11430 WP_054190481.1 2282236..2282805(-) (sigH) [Staphylococcus aureus strain t5047]
MEYDLTTQDSTTKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1056993 ACFIOT_RS11430 WP_054190481.1 2282236..2282805(-) (sigH) [Staphylococcus aureus strain t5047]
TTGGAATATGATTTGACAACTCAAGACAGTACAACCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCAAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCTATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

97.884

100

0.979
  sigH Staphylococcus aureus N315

96.825

100

0.968

Multiple sequence alignment