Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFIOT_RS09430 Genome accession   NZ_CP170414
Coordinates   1876823..1877809 (-) Length   328 a.a.
NCBI ID   WP_054190362.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t5047     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1871823..1882809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOT_RS09405 - 1872083..1872430 (-) 348 WP_054190359.1 hypothetical protein -
  ACFIOT_RS09410 - 1872616..1873209 (+) 594 WP_054190360.1 CYTH domain-containing protein -
  ACFIOT_RS09415 - 1873313..1873678 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  ACFIOT_RS09420 yjbH 1873701..1874507 (+) 807 WP_054190361.1 protease adaptor protein YjbH -
  ACFIOT_RS09425 pepF 1874967..1876775 (-) 1809 WP_070016683.1 oligoendopeptidase F -
  ACFIOT_RS09430 coiA 1876823..1877809 (-) 987 WP_054190362.1 competence protein CoiA Machinery gene
  ACFIOT_RS09435 mecA 1877930..1878649 (-) 720 WP_054190363.1 adaptor protein MecA -
  ACFIOT_RS09440 spxA 1879020..1879415 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACFIOT_RS09445 trpS 1879710..1880699 (+) 990 WP_054190364.1 tryptophan--tRNA ligase -
  ACFIOT_RS09450 opp4C 1880787..1881668 (-) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  ACFIOT_RS09455 opp4B 1881680..1882642 (-) 963 WP_054190365.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38854.26 Da        Isoelectric Point: 9.3244

>NTDB_id=1056988 ACFIOT_RS09430 WP_054190362.1 1876823..1877809(-) (coiA) [Staphylococcus aureus strain t5047]
MLVALNEEKERVLATTALRKTQYFCPMCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
DIEPFLKEIKQIPDILINNKYVIELQYSPIPYKEILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFDLENKQIYKFHQLQSLGGNKYFAYKTKDCISELFNETPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLNDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1056988 ACFIOT_RS09430 WP_054190362.1 1876823..1877809(-) (coiA) [Staphylococcus aureus strain t5047]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACGCAATATTTTTGTCCGAT
GTGTGGGAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GATATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAAGAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGGTATAAAGTGAGTTGGTTATTAA
ATGATGTTGATTACTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAACCCAATCACTCGAAAACTT
CATACGTTTGATTTAGAAAATAAGCAAATATATAAATTTCATCAATTACAAAGTTTAGGCGGCAATAAGTATTTTGCGTA
TAAGACGAAAGACTGTATTAGTGAGTTGTTTAATGAGACGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATTAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAACAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

92.378

100

0.924
  coiA Staphylococcus aureus N315

92.378

100

0.924

Multiple sequence alignment