Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOT_RS03165 Genome accession   NZ_CP170414
Coordinates   642043..642438 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t5047     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 637043..647438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOT_RS03140 - 638340..638744 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACFIOT_RS03145 - 639268..639501 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOT_RS03150 murA 639612..640877 (+) 1266 WP_054190451.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOT_RS03155 fabZ 640911..641351 (+) 441 WP_054190450.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOT_RS03160 - 641409..641849 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOT_RS03165 ssb 642043..642438 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOT_RS03170 sceD 642827..643522 (+) 696 WP_054190448.1 lytic transglycosylase SceD -
  ACFIOT_RS03175 tenA 643909..644598 (+) 690 WP_054190447.1 thiaminase II -
  ACFIOT_RS03180 thiD 644591..645421 (+) 831 WP_054190446.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOT_RS03185 thiM 645405..646196 (+) 792 WP_054190445.1 hydroxyethylthiazole kinase -
  ACFIOT_RS03190 thiE 646198..646839 (+) 642 WP_054190444.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1056961 ACFIOT_RS03165 WP_000932694.1 642043..642438(+) (ssb) [Staphylococcus aureus strain t5047]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1056961 ACFIOT_RS03165 WP_000932694.1 642043..642438(+) (ssb) [Staphylococcus aureus strain t5047]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTCGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment