Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOE_RS10495 Genome accession   NZ_CP170411
Coordinates   2117051..2117446 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2112051..2122446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOE_RS10470 thiE 2112650..2113291 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  ACFIOE_RS10475 thiM 2113293..2114084 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  ACFIOE_RS10480 thiD 2114068..2114898 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOE_RS10485 tenA 2114891..2115580 (-) 690 WP_000396077.1 thiaminase II -
  ACFIOE_RS10490 sceD 2115967..2116662 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  ACFIOE_RS10495 ssb 2117051..2117446 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOE_RS10500 - 2117640..2118080 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOE_RS10505 fabZ 2118139..2118579 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOE_RS10510 murA 2118613..2119878 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOE_RS10515 - 2119989..2120222 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOE_RS10520 - 2120354..2120446 (-) 93 WP_001790611.1 hypothetical protein -
  ACFIOE_RS10525 - 2120784..2121188 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1056952 ACFIOE_RS10495 WP_000932694.1 2117051..2117446(-) (ssb) [Staphylococcus aureus strain t002]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1056952 ACFIOE_RS10495 WP_000932694.1 2117051..2117446(-) (ssb) [Staphylococcus aureus strain t002]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment