Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFIOR_RS11275 Genome accession   NZ_CP170409
Coordinates   2230885..2231454 (-) Length   189 a.a.
NCBI ID   WP_000872874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t359     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2225885..2236454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOR_RS11235 - 2226359..2226967 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  ACFIOR_RS11240 rplL 2227142..2227510 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFIOR_RS11245 rplJ 2227553..2228053 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACFIOR_RS11250 rplA 2228325..2229017 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFIOR_RS11255 rplK 2229225..2229647 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFIOR_RS11260 nusG 2229828..2230376 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFIOR_RS11265 secE 2230389..2230571 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFIOR_RS11270 rpmG 2230627..2230770 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFIOR_RS11275 sigH 2230885..2231454 (-) 570 WP_000872874.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFIOR_RS11280 - 2231535..2232059 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACFIOR_RS11285 rlmB 2232059..2232805 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFIOR_RS11290 - 2232813..2233217 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACFIOR_RS11295 cysS 2233210..2234610 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  ACFIOR_RS11300 cysE 2234594..2235241 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1056909 ACFIOR_RS11275 WP_000872874.1 2230885..2231454(-) (sigH) [Staphylococcus aureus strain t359]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1056909 ACFIOR_RS11275 WP_000872874.1 2230885..2231454(-) (sigH) [Staphylococcus aureus strain t359]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.413

100

0.984
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment