Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFIOR_RS09365 Genome accession   NZ_CP170409
Coordinates   1840069..1841055 (-) Length   328 a.a.
NCBI ID   WP_410539142.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t359     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1835069..1846055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOR_RS09340 - 1835329..1835676 (-) 348 WP_001242102.1 hypothetical protein -
  ACFIOR_RS09345 - 1835862..1836455 (+) 594 WP_000224612.1 CYTH domain-containing protein -
  ACFIOR_RS09350 - 1836559..1836924 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  ACFIOR_RS09355 yjbH 1836947..1837753 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  ACFIOR_RS09360 pepF 1838213..1840021 (-) 1809 WP_248314886.1 oligoendopeptidase F -
  ACFIOR_RS09365 coiA 1840069..1841055 (-) 987 WP_410539142.1 competence protein CoiA Machinery gene
  ACFIOR_RS09370 mecA 1841176..1841895 (-) 720 WP_001217728.1 adaptor protein MecA -
  ACFIOR_RS09375 spxA 1842266..1842661 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACFIOR_RS09380 trpS 1842956..1843945 (+) 990 WP_000448943.1 tryptophan--tRNA ligase -
  ACFIOR_RS09385 opp4C 1843987..1844868 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  ACFIOR_RS09390 opp4B 1844880..1845842 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38900.60 Da        Isoelectric Point: 9.7683

>NTDB_id=1056904 ACFIOR_RS09365 WP_410539142.1 1840069..1841055(-) (coiA) [Staphylococcus aureus strain t359]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLELTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1056904 ACFIOR_RS09365 WP_410539142.1 1840069..1841055(-) (coiA) [Staphylococcus aureus strain t359]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACTCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.256

100

0.973

Multiple sequence alignment