Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACFIOR_RS06075 Genome accession   NZ_CP170409
Coordinates   1162064..1162750 (+) Length   228 a.a.
NCBI ID   WP_168768460.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t359     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1157064..1167750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOR_RS06040 yqeH 1157591..1158691 (+) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -
  ACFIOR_RS06045 aroE 1158705..1159511 (+) 807 WP_168768461.1 shikimate dehydrogenase -
  ACFIOR_RS06050 yhbY 1159515..1159805 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  ACFIOR_RS06055 nadD 1159808..1160377 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACFIOR_RS06060 yqeK 1160367..1160951 (+) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACFIOR_RS06065 rsfS 1160952..1161305 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACFIOR_RS06070 - 1161308..1162024 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ACFIOR_RS06075 comEA 1162064..1162750 (+) 687 WP_168768460.1 ComEA family DNA-binding protein Machinery gene
  ACFIOR_RS06080 - 1162842..1163303 (+) 462 WP_000439693.1 ComE operon protein 2 -
  ACFIOR_RS06085 comEC 1163308..1165509 (+) 2202 WP_001815444.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACFIOR_RS06090 holA 1165566..1166540 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  ACFIOR_RS06095 rpsT 1166585..1166836 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25872.64 Da        Isoelectric Point: 9.7956

>NTDB_id=1056889 ACFIOR_RS06075 WP_168768460.1 1162064..1162750(+) (comEA) [Staphylococcus aureus strain t359]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDRDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1056889 ACFIOR_RS06075 WP_168768460.1 1162064..1162750(+) (comEA) [Staphylococcus aureus strain t359]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATAGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGAAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.123

100

0.991
  comEA Staphylococcus aureus N315

97.368

100

0.974

Multiple sequence alignment