Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOR_RS03225 Genome accession   NZ_CP170409
Coordinates   645661..646056 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t359     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 640661..651056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOR_RS03195 - 641919..642323 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACFIOR_RS03200 - 642661..642753 (+) 93 WP_001790611.1 hypothetical protein -
  ACFIOR_RS03205 - 642885..643118 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOR_RS03210 murA 643229..644494 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOR_RS03215 fabZ 644528..644968 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOR_RS03220 - 645027..645467 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOR_RS03225 ssb 645661..646056 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOR_RS03230 sceD 646445..647140 (+) 696 WP_108919154.1 lytic transglycosylase SceD -
  ACFIOR_RS03235 tenA 647665..648354 (+) 690 WP_410539352.1 thiaminase II -
  ACFIOR_RS03240 thiD 648347..649177 (+) 831 WP_000594942.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOR_RS03245 thiM 649161..649952 (+) 792 WP_001108478.1 hydroxyethylthiazole kinase -
  ACFIOR_RS03250 thiE 649954..650595 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1056877 ACFIOR_RS03225 WP_000932694.1 645661..646056(+) (ssb) [Staphylococcus aureus strain t359]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1056877 ACFIOR_RS03225 WP_000932694.1 645661..646056(+) (ssb) [Staphylococcus aureus strain t359]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment